LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-639


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Gene
miRNA
Score
DIANA Links
XLOC_007998
hsa-miR-639
0.960
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017185
Biotype: transcript isomorph
Gene id: XLOC_007998
Gene Name: XLOC_007998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-193
0.063
0
XLOC_008602
hsa-miR-639
0.931
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018322
Biotype: transcript isomorph
Gene id: XLOC_008602
Gene Name: XLOC_008602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-163
0.053
0
XLOC_007377
hsa-miR-639
0.908
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015993
Biotype: transcript isomorph
Gene id: XLOC_007377
Gene Name: XLOC_007377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-169
0.048
0
chr22-38_28785274-29006793.1
hsa-miR-639
0.907
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119735-119758
0.006
9
7mer
119611-119629
0.005
9
7mer
114655-114680
0.003
4
6mer
4293-4318
0.003
0
7mer
206967-206993
0.002
1
7mer
61006-61026
0.002
Not Conserved
6mer
154045-154063
0.002
0
6mer
89324-89342
0.002
2
6mer
110725-110745
0.002
Not Conserved
6mer
76092-76118
0.001
0
6mer
250738-250757
0.001
0
6mer
15415-15434
0.001
0
6mer
64630-64650
0.001
Not Conserved
6mer
45277-45296
0.001
0
6mer
47356-47370
0.001
3
6mer
214896-214918
0.001
1
6mer
199395-199416
0.001
1
6mer
143715-143738
0.001
2
6mer
38378-38397
0.001
0
6mer
101276-101301
0.001
0
6mer
143260-143274
0.001
4
6mer
93986-94007
0.001
1
6mer
161733-161758
0.001
1
6mer
176845-176864
0.001
Not Conserved
6mer
257573-257593
0.001
Not Conserved
6mer
66544-66568
0.001
Not Conserved
6mer
143514-143532
0.001
3
6mer
143446-143463
0.001
2
6mer
143376-143396
0.001
2
6mer
143583-143601
0.000
2
RP11-737O24.2
hsa-miR-639
0.903
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581488
Biotype: antisense
Gene id: ENSG00000265907
Gene Name: RP11-737O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-507
0.047
1
XLOC_005304
hsa-miR-639
0.887
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011821
Biotype: transcript isomorph
Gene id: XLOC_005304
Gene Name: XLOC_005304
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-241
0.030
0
7mer
569-592
0.014
1
AC116614.1
hsa-miR-639
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456949
Biotype: antisense
Gene id: ENSG00000235688
Gene Name: AC116614.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-106
0.041
1
HOXA10-HOXA9
hsa-miR-639
0.840
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1905-1922
0.033
1
6mer
1471-1491
0.005
8
MIR124-2HG
hsa-miR-639
0.837
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524284
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-124
0.037
3
MIR124-2HG
hsa-miR-639
0.835
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524060
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-130
0.037
3
PCBP2-OT1
hsa-miR-639
0.832
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_109828.1
Biotype: sense
Gene id: NR_109828.1 (gene)
Gene Name: PCBP2-OT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-314
0.037
9
SRD5A3-AS1
hsa-miR-639
0.823
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000598819
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-52
0.036
0
RP11-783K16.10
hsa-miR-639
0.813
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539086
Biotype: processed_transcript
Gene id: ENSG00000257069
Gene Name: RP11-783K16.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2540-2559
0.027
3
7mer
2618-2636
0.005
1
6mer
1145-1165
0.002
5
6mer
988-1007
0.001
5
RP1-100J12.1
hsa-miR-639
0.798
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608809
Biotype: antisense
Gene id: ENSG00000273254
Gene Name: RP1-100J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-24
0.033
1
FAM157A
hsa-miR-639
0.796
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
786-807
0.033
0
FOXP4-AS1
hsa-miR-639
0.795
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454812
Biotype: antisense
Gene id: ENSG00000234753
Gene Name: FOXP4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-130
0.033
5
SRD5A3-AS1
hsa-miR-639
0.794
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000591915
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
612-638
0.033
0
FOXP4-AS1
hsa-miR-639
0.785
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000439386
Biotype: antisense
Gene id: ENSG00000234753
Gene Name: FOXP4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-128
0.032
5
SRRM2-AS1
hsa-miR-639
0.778
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571305
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-747
0.031
1
FAM201A
hsa-miR-639
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000471864
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-639
Sequence: aucgcugcgguugcgagcgcugu
MirBase ID: MIMAT0003309
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-29
0.023
0
9mer
413-429
0.008
0
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